The research from the Department of Biology results in numerous publications each year. Here we identify publications in peer-reviewed journals over the past few years.
2025
March 2025
- Cafiero, C., Palmirotta, R., Martinelli, C., Micera, A., Giacò, L., Persiani, F., Morrione, A., […] Giordano, A., and Pisconti, S. (2025) Oncological Treatment Adverse Reaction Prediction: Development and Initial Validation of a Pharmacogenetic Model in Non-Small-Cell Lung Cancer Patients. Genes, 16(3), p.265.
- Correale, P., Baglio, G., Parrella, R., Saladino, R.E., Cuomo, N., Scarano, F., Francone, M., Cuzzola, M., Foti, G., Mutti, L., Pentimalli, F., and Giordano, A (2025) A rapid ecologic analysis, confirmed by a case–control study, identifies class I HLA alleles correlated to the risk of COVID-19. Journal of Translational Medicine, 23(1), p.303.
- Di Giulio, V., Canciello, A., Carletti, E., De Luca, A., Giordano, A., Morrione, A., Berardinelli, J., Russo, V., Solari, D., Cavallo, L.M. and Barboni, B. (2025) The Dual Nature of KLHL Proteins: From Cellular Regulators to Disease Drivers. European Journal of Cell Biology, p.151483.
- Di Stefano, M., Piazza, L., Poles, C., Galati, S., Granchi, C., Giordano, A., Campisi, L., Macchia, M., Poli, G. and Tuccinardi, T. (2025) KinasePred: A Computational Tool for Small-Molecule Kinase Target Prediction. International Journal of Molecular Sciences, 26(5), p.2157.
- Gerhard, G.S., Allard, J.B., Kaniper, S., Lynch, D., Lee, H. and Kumar, S. (2025) Genome Assembly of Arctica islandica, the Longest-Lived Non-Colonial Animal Species. Animals, 15(5), p.690.
- Gould, A.L. and Osland, H.K. (2025) Strain-level variation in microbial symbiosis: lessons from the Siphamia–Photobacterium mandapamensis system. Trends in Microbiology.
- Gray, S.G., O’Connor, D., Mutti, L. and Meirson, T. (2025) Reducing pERKs to Break “RAS” istance to Sotorasib. Journal of Thoracic Oncology, 20(3), pp.259-261.
- Ma, X., Zhang, C., Yang, L., Hedges, S.B. and Zhong, B. (2025) New insights on angiosperm crown age based on Bayesian node dating and skyline fossilized birth-death approaches. Nature Communications, 16(1), p.2265. Nature Communications, 16(1), p.2265.
- Mauriello, A., Correra, A., Maratea, A.C., Caturano, A., Liccardo, B., Perrone, M.A., Giordano, A., Nigro, G., D’Andrea, A. and Russo, V. (2025) Serum Lipids, Inflammation, and the Risk of Atrial Fibrillation: Pathophysiological Links and Clinical Evidence. Journal of Clinical Medicine, 14(5), p.1652.
- Naghdi, S., Mishra, P., Roy, S.S., Weaver, D., Walter, L., Davies, E., Antony, A.N., Lin, X., Moehren, G., Feitelson, M.A. and Reed, C.A., (2025) VDAC2 and Bak scarcity in liver mitochondria enables targeting hepatocarcinoma while sparing hepatocytes. Nature Communications, 16(1), p.2416.
- Traylor, C.R., Ulyshen, M.D., Cornish, J.W., Tigreros, G. and McHugh, J.V., (2025) Progress toward a list of saproxylic beetles (Coleoptera) in the southeastern USA. ZooKeys, 1232, p.1.
February 2025
- Babaian, C., Kumar, S. and Miura, S., (2025) Teaching Biology & Evolution Through the Watery Matrix of Life: A Genomic Medicine Perspective. The American Biology Teacher, 87(2), pp.84-92.
- e Vieira, L.M.D.C., Epiphanio, S., de Azevedo Fernandes, N.C.C., Guerra, J.M., Dias, J.L.C., Pacheco, M.A., Escalante, A.A. and Braga, É.M. (2025) Unraveling the Host Range of Plasmodium huffi: Morphological, Histopathological, and Molecular Characterization in Red-legged Seriemas from Brazil. Parasitology, pp.1-48.
- Gerhard, G. S., Allard, J. B., Kaniper, S., Lynch, D., Lee, H., & Kumar, S. (2025) Genome Assembly of Arctica islandica, the Longest-Lived Non-Colonial Animal Species. Animals, 15(5), 690. https://doi.org/10.3390/ani15050690
- Hampe, M., Darbinian, N., Merabova, N., Darbinyan, A., Hamze, J., Bharai, U., Persidsky, Y., Morrison, M.F., Amini, S., Goetzl, L. and Selzer, M.E. (2025) Prenatal Alcohol Exposure Inhibits Transient Expression of Autophagy and Synaptic Proteins in Developing Brain. Obstetrics and Gynecology Research, 8(1), pp.10-24.
- Mowlaei, M.E., Li, C., Jamialahmadi, O., Dias, R., Chen, J., Jamialahmadi, B., Rebbeck, T.R., Carnevale, V., Kumar, S. and Shi, X. (2025) STICI: Split-Transformer with integrated convolutions for genotype imputation.
- Phillips, P.M., Fahey, J. and Behm, J.E., (2025) An investigation of Haemaphysalis longicornis (Ixodida: Ixodidae) habitat and pathogen overlap with resident tick species in Southeastern Pennsylvania forests. Journal of Medical Entomology, p.tjae159.
- Sigg, D. and Carnevale, V. (2025) Markov Models and Long-term Memory in Ion Channels: a Contradiction in Terms? Biophysical Journal.
- Tamayo-Quintero, J., Martínez-de la Puente, J., Matta, N.E., Pacheco, M.A. and Rivera-Gutierrez, H.F. (2025) Imprudent use of MalAvi names biases the estimation of parasite diversity of avian haemosporidians. PLoS pathogens, 21(2), p.e1012911.
January 2025
- Bastolla, U., Geiler-Samerotte, K., Perez, M. and Liberles, D.A. (2025) 2024 Zuckerkandl Prize. J Mol Evol (2025). https://doi.org/10.1007/s00239-025-10234-y
- Feitelson, M.A. (2025) Introductory Chapter: The Enigma of Hepatitis B Therapeutics. In Hepatitis B Virus-Pathogenesis and Therapeutic Approaches. IntechOpen.
- Hong, F., Hedges, S.B., Yang, Z., Suh, J.W., Qiu, S., Timyan, J. and Zhu, Z. (2025) Decoding primary forest changes in Haiti and the Dominican Republic using Landsat time series. Remote Sensing of Environment, 318, p.114590.
- Seid, C.A. […] Cordes, E.E., Levin, L.A., Cortés, J., Rouse, G.G. (2025) A faunal inventory of methane seeps on the Pacific margin of Costa Rica. ZooKeys, 1222, p.1.
- Soewongsono, A.C., Diao, J., Stark, T., Wilson, A.E., Liberles, D.A., Holland, B.R. and O’Reilly, M.M. (2025) Matrix-analytic methods for the evolution of species trees, gene trees, and their reconciliation. Methodology and Computing in Applied Probability, 27(1), pp.1-47.
2024
December 2024
- Cortellino, S., D'Angelo, M., Quintiliani, M. and Giordano, A. (2024) Cancer knocks you out by fasting: Cachexia as a consequence of metabolic alterations in cancer. Journal of Cellular Physiology, p.e31417.
- Council, O.D., Tyers, L., […] Pond, S.K., […] Swanstrom, R. (2024) The persistent pool of HIV-1-infected cells is formed episodically during untreated infection Journal of Virology, pp.e00979-24.
- Craig, J.M., Hedges, S.B. and Kumar, S. (2024) Completing a molecular timetree of primates. Frontiers in Bioinformatics, 4, p.1495417.
- DelloStritto, M., Micheletti, C. and Klein, M.L. (2024) Molecular dynamics studies of knotted polymers. The Journal of Chemical Physics, 161(24).
- Di Stefano, M., …. M., Giordano, A., Tuccinardi, T. and Poli, G., (2024) Watermelon: setup and validation of an in silico fragment-based approach. Journal of Enzyme Inhibition and Medicinal Chemistry, 39(1), p.2356179.
- Kumar, S., Stecher, G., Suleski, M., Sanderford, M., Sharma, S. and Tamura, K. (2024) MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing. Molecular Biology and Evolution, 41(12), p.msae263.
- Litterio, M., Marchetti, N., Carubbi, F., Tudini, M., Mutti, L. and Ferri, C. (2024) Hepatic sinusoidal obstruction syndrome (SOS) associated with checkpoint inhibitor therapy. European Journal of Case Reports in Internal Medicine.
- Mazzarotti, G., …., Giordano, A., and Alfano, L. (2024) Oleanolic Acid Modulates DNA Damage Response to Camptothecin Increasing Cancer Cell Death. International Journal of Molecular Sciences, 25(24), p.13475.
- Myers, E.A., ... and Hedges, S.B. (2024) Population divergence in co-distributed Caribbean landfrogs (Eleutherodactylidae: Eleutherodactylus) along the Soufrière volcanic slope of Guadeloupe Island, Lesser Antilles. Zoological Journal of the Linnean Society, 202(4), p.zlae128.
- Schools, M. and Hedges, S.B. (2024) A new forest lizard fauna from Caribbean islands (Squamata, Diploglossidae, Celestinae). Zootaxa, 5554(1), pp.1-306.
- Tagliacollo, V.A., Tan, M., Reis, R.E., Gaia, R., Carrijo, V., Ranuzi, M., Craig, J.M. and Albert, J.S. (2024) Time-calibrated phylogeny of neotropical freshwater fishes. Frontiers in Bioinformatics, 4, p.1433995.
November 2024
- Busala, G.M., Phillips, P.M. and Behm, J.E. (2024) Variation in forest patch habitat quality for white‐footed mice driven by invasive plants in an urbanizing landscape. Ecosphere, 15(11), p.e70068.
- Castagna, F., Montano, L., Lombardi, R., Pagano, A., Gigliotti, A., Bava, R., Lupia, C., Costagliola, A., Giordano, A., Palma, E. and Britti, D. (2024) Understanding Environmental Contamination Through the Lens of the Peregrine Falcon (Falco peregrinus). Environments, 11(12), p.264.
- Maloney, R., Junod, S.L., Hagen, K.M., Lewis, T., Cheng, C., Shajan, F.J., Zhao, M., Moore, T.W., Truong, T.H., Yang, W. and Wang, R.E., (2024) Flexible Fluorine-Thiol Displacement Stapled Peptides with Enhanced Membrane Penetration for the Estrogen Receptor/Coactivator Interaction. Journal of Biological Chemistry, p.107991.
- Rincon-Sandoval, M., De-Kayne, R., Shank, S.D., Pirro, S., Ko’ou, A., Abueg, L., Tracey, A., Mountcastle, J., O’Toole, B., Balacco, J. and Formenti, G. (2024) Ecological diversification of sea catfishes is accompanied by genome-wide signatures of positive selection. Nature Communications, 15(1), p.10040.
- Toracchio, L., Carrabotta, M., Mancarella, C., Morrione, A. and Scotlandi, K. (2024) EphA2 in Cancer: Molecular Complexity and Therapeutic Opportunities. International Journal of Molecular Sciences, 25(22), p.12191.
- Zarate, S., Bertram, M.R., Rodgers, C., Reed, K., Pelzel-McCluskey, A., Gomez-Romero, N., Rodriguez, L.L., Mayo, C., Mire, C., Pond, S.L.K. and Velazquez-Salinas, L. (2024) Phylogenomic Signatures of a Lineage of Vesicular Stomatitis Indiana Virus Circulating During the 2019–2020 Epidemic in the United States. Viruses, 16(11), p.1803.
October 2024
- Andretta, E., Costa, A., Ventura, E., Quintiliani, M., Damiano, S., Giordano, A., Morrione, A. and Ciarcia, R., (2024) Capsaicin Exerts Antitumor Activity in Mesothelioma Cells. Nutrients, 16(21), p.3758.
- Betters, M.J., Cortés, J. and Cordes, E.E., (2024) New species and records of limpets (Mollusca, Gastropoda) from the Pacific Costa Rica Margin. ZooKeys, 1214, p.281.
- Castagna, F., Liguori, G., Lombardi, R., Bava, R., Costagliola, A., Giordano, A., Quintiliani, M., Giacomini, D., Albergo, F., Gigliotti, A. and Lupia, C., (2024) Hepatitis E and Potential Public Health Implications from a One-Health Perspective: Special Focus on the European Wild Boar (Sus scrofa) Pathogens, 13(10), p.840.
- Distefano, A., Orlando, L., Partsinevelos, K., Longhitano, L., Emma, R., Caruso, M., Vicario, N., Denaro, S., Sun, A., Giordano, A. and Tomasello, B., (2024) Comparative evaluation of cigarette smoke and a heated tobacco product on microglial toxicity, oxidative stress and inflammatory response. Journal of Translational Medicine, 22(1), p.876.
- Liu, Q., Rogers, A.D., Roch, C., Gordon, J., Duarte, C.M., Robinson, L.F., Waller, R.G., Ferrier-Pagès, C., Brooke, S., Carreiro-Silva, M. and Benson, K., (2024) Conservation and Restoration of Cold-Water Corals: CORDAP R&D Technology Roadmap. Coral Research & Development Accelerator Platform.
- Petro, D.A., Shaban, N., Aaron, S., Chacky, F., Lazaro, S., Boni, M.F. and Ishengoma, D.S. (2024) Geospatial analysis of malaria burden in Kagera region, northwestern Tanzania using health facility and community survey data. In Open Forum Infectious Diseases (p. ofae609). Oxford University Press.
- Servadio, J.L., Choisy, M., Thai, P.Q. and Boni, M.F., (2024) Influenza vaccine allocation in tropical settings under constrained resources. PNAS nexus, 3(10), p.pgae379.
- Swartz, T.M., Blaney, A.R. and Behm, J.E., (2024) Crumb bums? Context dependence in ecosystem services supplied by common urban animals. Ecosphere, 15(10), p.e70014.
- Tomassetti, C., Insinga, G., Gimigliano, F., Morrione, A., Giordano, A. and Giurisato, E., (2024) Insights into CSF-1R Expression in the Tumor Microenvironment. Biomedicines, 12(10), p.2381.
- Walker, M.J. and Spigler, R.B. (2024) Experimental evidence of inbreeding depression for competitive ability and its population-level consequences in a mixed-mating plant. Frontiers in Plant Science, 15, p.1398060.
- Zehr, J.D., Kosakovsky Pond, S.L., Shank, S.D., McQueary, H., Grenier, J.K., Whittaker, G.R., Stanhope, M.J. and Goodman, L.B., (2024) Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the Embecovirus subgenus. Microbiology Spectrum, pp.e00867-24.
September 2024
- Ansari, S.J., Mohapatra, S., Fiorin, G., Klein, M.L. and Mogurampelly, S. (2024) Proton Transport Scenarios in Sulfuric Acid Explored via Ab Initio Molecular Dynamics Simulations. The Journal of Physical Chemistry B.
- Carrick, J.V., Mienis, F., Cordes, E.E., Demopoulos, A.W. and Davies, A.J., (2024) Gulf Stream intrusion and deep current upwelling drive dynamic patterns of temperature and food supply within cold‐water coral reefs. Limnology and Oceanography.
- DelloStritto, M. and Klein, M.L., (2024) Understanding Strain and Failure of a Knot in Polyethylene Using Molecular Dynamics with Machine-Learned Potentials. The Journal of Physical Chemistry Letters, 15, pp.9070-9077.
- Lewkiewicz, S.M., Seibold, B. and Helmus, M.R. (2024) Quantifying population resistance to climatic variability: The invasive spotted lanternfly grape pest is buffered against temperature extremes in California. Ecological Modelling, 497, p.110841.
- Panuccio, G., Correale, P., d’Apolito, M., Mutti, L., Giannicola, R., Pirtoli, L., Giordano, A., Labate, D., Macheda, S., Carabetta, N. and Abdelwahed, Y.S. (2024) Immuno-related cardio-vascular adverse events associated with immuno-oncological treatments: an under-estimated threat for cancer patients. Basic Research in Cardiology, pp.1-17.
- Pérez-Sánchez, M., Immordino, P., Romano, G., Giordano, A., García-Gil, C. and Morales, F. (2024) Access of migrant women to sexual and reproductive health services: a systematic. Midwifery, p.104167.
- Tenore, A., Russo, F., Jacob, J., Grattepanche, J.D., Buttaro, B. and Klapper, I., (2024) A Mathematical Model of Diel Activity and Long Time Survival in Phototrophic Mixed-Species Subaerial Biofilms. Bulletin of Mathematical Biology, 86(10), p.123.
- Weinnig, A.M., Herrera, S. and Cordes, E.E. (2024) A decrease in pH, increase in temperature, and pollution exposure elicit distinct stress responses in a scleractinian coral (Desmophyllum pertusum). Deep Sea Research Part II: Topical Studies in Oceanography, p.105416.
August 2024
- Babaian, C. and Kumar, S. (2024) Of Phylogenies and Tumors: Cancer as a Model System to Teach Evolution The American Biology Teacher 86 (2), 62-70
- Gray, S.G., Mutti, L. and Meirson, T., (2024) Encouraging Fussy Eaters in EGFR-Mutated Lung Cancer. Journal of Thoracic Oncology, 19(8), pp.1125-1127.
- Harman, J., Nödl, M.T., Fenton, B., Hipsley, C.A., Liberles, D.A., Narayan, E., Settele, J. and Traulsen, A. (2024) 2024 joint BMC Ecology and Evolution and BMC Zoology image competition: the winning images. BMC Ecology and Evolution, 24(1), p.102.
- Schwaner, M.J. and Hsieh, S.T. (2024) Computational and Physical Modeling to Understand Form-Function Relationships Integrative And Comparative Biology, p.icae136.
- Sharma, S. and Kumar, S. (2024) Discovering Fragile Clades and Causal Sequences in Phylogenomics by Evolutionary Sparse Learning. Molecular Biology and Evolution, 41 (7), msae131, https://doi.org/10.1093/molbev/msae131
July 2024
- Bonfim, M., Bunson, S.L., Sellers, A.J., Torchin, M.E., Ruiz, G.M. and Freestone, A.L. (2024) Biogeographic variation in environmental and biotic resistance modifies predicted risk of marine invasions by ships Frontiers in Marine Science 11, 1374887
- Busala, G.M., Helmus, M.R. and Behm, J.E. (2024) Non-native herpetofauna of Aruba island (Caribbean): patterns and insights Biological Invasions, 1-13
- Costa A, Forte IM, Pentimalli F, Iannuzzi CA, Alfano L, Capone F, Camerlingo R, Calabrese A, von Arx C, Benot Dominguez R, Quintiliani M, De Laurentiis M, Morrione A, Giordano A. (2024) Pharmacological inhibition of CDK4/6 impairs diffuse pleural mesothelioma 3D spheroid growth and reduces viability of cisplatin-resistant cells Frontiers in Oncology 14
- Dell’Anno, I., Morani, F., Patergnani, S., Daga, A., Pinton, P., Giorgi, C., Mutti, L., Gemignani, F. and Landi, S. (2024) Thonzonium bromide inhibits progression of malignant pleural mesothelioma through regulation of ERK1/2 and p38 pathways and mitochondrial uncoupling Cancer Cell International 24 (1), 226
- Gray, S.G., Meirson, T. and Mutti, L. (2024) OncoTherapy in Mesothelioma Asbestos, 326-344
- Jesse, W.A., Ellers, J., Behm, J.E., Costa, G.C., Blair Hedges, S. and Helmus, M.R. (2024) Elevated human impact on islands increases the introduction and extinction status of native insular reptiles Ecography, e06817
- Klapper, I., Szyld, D.B., Yu, X., Zengler, K., Zhang, T. and Zúniga, C. (2024) A domain decomposition method for solution of a PDE-constrained generalized Nash equilibrium model of biofilm community metabolism SIAM Journal on Applied Mathematics 84 (1), 97-113
- Lucaci, A.G., Brew, W.E., Lamanna, J., Selberg, A., Carnevale, V., Moore, A.R. and Kosakovsky Pond, S.L. (2024) The evolution of mammalian Rem2: unraveling the impact of purifying selection and coevolution on protein function, and implications for human disorders Frontiers in Bioinformatics 4, 1381540
- Mancini, A., Gentile, M.T., Pentimalli, F., Cortellino, S., Grieco, M. and Giordano, A. (2024) Multiple aspects of matrix stiffness in cancer progression Frontiers in Oncology 14
- McCloskey, N.S., Mammedova, A. and Liberles, D.A., (2024) PEMPS: a phylogenetic software tool to model the evolution of metabolic pathways. BMC bioinformatics, 25(1), p.244.
- Mezzacappa, C., Komiya, Y. and Habas, R. (2024) Reversion induced LIM domain protein (RIL) is a Daam1-interacting protein and regulator of the actin cytoskeleton during non-canonical Wnt signaling Developmental Biology
- Molina-de la Fuente, I., Pacheco, M.A., García, L., González, V., Riloha, M., Oki, C., Benito, A., Escalante, A.A. and Berzosa, P. (2024) Evolution of pfhrp2 and pfhrp3 deletions in Equatorial Guinea between the pre–and post–RDT introduction Malaria Journal 23
- Repetto, M.F., Torchin, M.E., Ruiz, G.M., Schlöder, C. and Freestone, A.L. (2024) Biogeographic and seasonal differences in consumer pressure underlie strong predation in the tropics Proceedings B 291 (2026), 20240868
- Traylor, C.R., Ulyshen, M.D., Bragg, D.C. and McHugh, J.V. (2024) Forest bees benefit from compositionally diverse broadleaf canopies Forest Ecology and Management 566, 122051
- Ventura, E., Ducci, G., Benot Dominguez, R., Ruggiero, V., Belfiore, A., Sacco, E., Vanoni, M., Iozzo, R.V., Giordano, A. and Morrione, A. (2024) Progranulin oncogenic axis in solid tumor: novel target for therapy National Cancer Institute
- Weaver, S., Dávila Conn, V.M., Ji, D., Verdonk, H., Ávila-Ríos, S., Brown, L., Wertheim, J.O. and Kosakovsky Pond, S.L., (2024) AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters. Frontiers in Bioinformatics, 4, p.1400003.
- Zeni, C., Komiya, Y. and Habas, R. (2024) Formin Binding Protein 1 (FNBP1) regulates non-canonical Wnt signaling and vertebrate gastrulation (12 words) Developmental Biology
June 2024
- Ali, J.R. and Hedges, S.B. (2024) Land Bridges and Rafting Theories to Explain Terrestrial-Vertebrate Biodiversity on Madagascar. Annual Review of Marine Science, 17
- Ali, J.R. and Hedges, S.B. (2024) Paleogeography of the Aves Ridge and its potential role as a bio-colonization pathway linking South America and the Greater Antilles in the mid-Cenozoic. Earth-Science Reviews, p.104823
- Darbinian, N., Hampe, M., Martirosyan, D., Bajwa, A., Darbinyan, A., Merabova, N., Tatevosian, G., Goetzl, L., Amini, S. and Selzer, M.E. (2024) Fetal Brain-Derived Exosomal miRNAs from Maternal Blood: Potential Diagnostic Biomarkers for Fetal Alcohol Spectrum Disorders (FASDs). International Journal of Molecular Sciences, 25(11), p.5826
- Deng, Y., Carnevale, V., Ditchfield, R. and Pletneva, E.V. (2024) Applications of the Newly Developed Force-Field Parameters Uncover a Dynamic Nature of Ω-Loop C in the Lys-Ligated Alkaline Form of Cytochrome c. The Journal of Physical Chemistry B
- Mancarella, C., Morrione, A. and Scotlandi, K. (2024) Extracellular Interactors of the IGF System: Impact on Cancer Hallmarks and Therapeutic Approaches. International Journal of Molecular Sciences, 25(11), p.5915
- Melillo, A., Rachedi, S., Caggianese, G., Gallo, L., Maiorano, P., Gimigliano, F., Lucidi, F., De Pietro, G., Guida, M., Giordano, A. and Chirico, A. (2024) Synchronization of a Virtual Reality Scenario to Uterine Contractions for Labor Pain Management: Development Study and Randomized Controlled Trial. Games for Health Journal
- Nama, K., Su, B., Marquez, J., Khokha, M.K. and Habas, R (2024) The dishevelled associated activator of morphogenesis protein 2 (Daam2) regulates neural tube closure. Developmental Dynamics, 253(12), pp.1130-1146.
- Tingey, M., Ruba, A., Jiang, Z. and Yang, W. (2024) Deciphering vesicle-assisted transport mechanisms in cytoplasm to cilium trafficking. Frontiers in Cellular Neuroscience, 18, p.1379976
- Walicka, M., Krysiński, A., La Rosa, G.R.M., Sun, A., Campagna, D., Di Ciaula, A., Dugal, T., Kengne, A., Le Dinh, P., Misra, A. and Polosa, R. (2024) Influence of quitting smoking on diabetes-related complications: A scoping review with a systematic search strategy. Diabetes & Metabolic Syndrome: Clinical Research & Reviews, p.103044
- Wang, R., DelloStritto, M., Klein, M.L., Borguet, E. and Carnevale, V., (2024) Topological properties of interfacial hydrogen bond networks. Physical Review B, 110(1), p.014105.
May 2024
- Babaian, C. (2024) Deconstructing DNA Beyond the Helix. American Scientist, 112(2), pp.96-103.
- Babaian, C. and Kumar, S. (2024) Visualizing Genomic Medicine: An Introduction to General Biology. The American Biology Teacher, 86(5), pp.265-273.
- Beinart, R.A., Arellano, S.M., Chaknova, M., Meagher, J., Davies, A.J., Lopresti, J., Cowell, E.J., Betters, M., Ladd, T.M., Plowman, C.Q. and Rice, L.N. (2024) Deep seafloor hydrothermal vent communities buried by volcanic ash from the 2022 Hunga eruption. Communications Earth & Environment, 5(1), p.254
- Cortese, M.R. and Freestone, A.L. (2024) When species don’t move together: Non-concurrent range shifts in Eastern Pacific kelp forest communities. PloS one, 19(5), p.e0303536
- Dabrowski, K.R. and Daws, S.E. (2024) Morphine-Driven m6A Epitranscriptomic Neuroadaptations in Primary Cortical Cultures. Molecular Neurobiology, pp.1-21
- Emma, R., Fuochi, V., […] Ang, S. […] (2024) Author Correction: Cytotoxicity, mutagenicity and genotoxicity of electronic cigarettes emission aerosols compared to cigarette smoke: the REPLICA project. Scientific Reports, 14(1), p.10018
- Godineau, C., Theodorou, K. and Spigler, R.B. (2024) Effect of the seed bank on evolutionary rescue in small populations: univariate and multivariate demo-genetic dynamics. The American Naturalist. https://doi.org/10.1086/731402
- Makova, K.D., Pickett, B.D., […] Pond SLK, […] Eichler EE & Phillippy AM (2024) The complete sequence and comparative analysis of ape sex chromosomes. Nature, 630, pages 401–411
- Ose, N.J., Campitelli, P., Modi, T., Kazan, I.C., Kumar, S. and Ozkan, S.B. (2024) Some mechanistic underpinnings of molecular adaptations of SARS-COV-2 spike protein by integrating candidate adaptive polymorphisms with protein dynamics. Elife, 12, p.RP92063
- Phillips, P.M., Langhans, K.E., Helmus, M.R., Jesse, W.A., Surget‐Groba, Y. and Behm, J.E. (2024) Dispersal restriction and facilitation in species with differing tolerance to development: A landscape genetics study of native and introduced lizards. Diversity and Distributions, p.e13858
- Raucci, A., Cimmino, W., Grosso, S.P., Normanno, N., Giordano, A. and Cinti, S., (2024) Paper-based screen-printed electrode to detect miRNA-652 associated to triple-negative breast cancer. Electrochimica Acta, 487, p.144205.
- Schott, K., Usher, S.G., Serra, O., Carnevale, V., Pless, S.A. and Chua, H.C., (2024) Unplugging lateral fenestrations of NALCN reveals a hidden drug binding site within the pore region. Proceedings of the National Academy of Sciences, 121(22), p.e2401591121.
- Werb, O., Matuschewski, K., Weber, N., Hillers, A., Garteh, J., Jusu, A., Turay, B.S., Wauquier, N., Escalante, A.A., Pacheco, M.A. and Schaer, J. (2024) New member of Plasmodium (Vinckeia) and Plasmodium cyclopsi discovered in bats in Sierra Leone–nuclear sequence and complete mitochondrial genome analyses. International Journal for Parasitology
April 2024
- Bien, T., Alexander, B. H., Li, C., Goeler-Slough, N., Hsieh, S. T., & Kane, S. A. (2024) Using Pose Estimation and 3D Rendered Models to Study Leg-Mediated Self-righting by Lanternflies. Integrative and Comparative Biology, icae014
- Buonocore, M., De Biase, D., Sorrentino, D., Giordano, A., Paciello, O. and D’Ursi, A.M., (2024) An Exploratory Bioinformatic Investigation of Cats’ Susceptibility to Coronavirus-Deriving Epitopes. Life 14 (3), 334
- Canciello, A., Domínguez, R.B., Barboni, B., Giordano, A. and Morrione, A., (2024) Characterization of KLHL14 anti-oncogenic action in malignant mesothelioma. Heliyon 10 (6)
- Fan, Z., Zhang, R., Zhou, A., Hey, J., Song, Y., Osada, N., Hamada, Y., Yue, B., Xing, J. and Li, J., (2024) Genomic Evidence for the Complex Evolutionary History of Macaques (Genus Macaca). Journal of Molecular Evolution, 1-14
- Gray, S.G., Meirson, T. and Mutti, L. (2024) Based on the Real-World Results From Australia, Immunotherapy Is Not a Good Option for Patients With Mesothelioma. Journal of Thoracic Oncology, 19(4), pp.541-546
- Langedijk, A.C., Vrancken, B. […] Kosakovsky Pond, S.L. […] (2024) The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus. Nature Communications 15 (1), 3083
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- Pacheco, M.A., Cepeda, A.S., Miller, E.A., Beckerman, S., Oswald, M., London, E., Mateus-Pinilla, N.E. and Escalante, A.A., (2024) A new long-read mitochondrial-genome protocol (PacBio HiFi) for haemosporidian parasites: a tool for population and biodiversity studies. Malaria Journal 23 (1), 1-15
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March 2024
- Alfano, L., […] G., Dell’Aquila, M., Altieri, A., Caporaso, A. […] Boffo, S., […] Giordano, A. (2024) CDK9-55 guides the anaphase-promoting complex/cyclosome (APC/C) in choosing the DNA repair pathway choice. Oncogene, 1-11
- Joseph, S.B., […] Kosakovsky Pond, S.L. [...] Williamson C., (2024) The timing of HIV-1 infection of cells that persist on therapy is not strongly influenced by replication competency or cellular tropism of the provirus. PLoS pathogens 20 (2), e1011974
- Longobardi, C., Damiano, S., Fabroni, S., Montagnaro, S., Russo, V., Vaccaro, E., Giordano, A., Florio, S. and Ciarcia, R. (2024) Red Orange and Lemon Extract Ameliorates the Renal Oxidative Stress and Inflammation Induced by Ochratoxin A through the Modulation of Nrf2. Toxins 16 (3), 151
- Rahouma, M., Mynard, N., […] Mutti, L. (2024) Impact of Center Volume on Cardiopulmonary and Mortality Outcomes after Immune-Checkpoint Inhibitors for Cancer: A Systematic Review and Meta-Analysis. Cancers, 16(6), p.1136
- Rigon, M., Mutti, L. and Campanella, M. (2024) Pleural mesothelioma (PMe): The evolving molecular knowledge of a rare and aggressive cancer. Molecular Oncology, 18(4), pp.797-814
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- Todorovic, J., Swapna, I., Suma, A., Carnevale, V. and Zakon, H. (2024) Dual mechanisms contribute to enhanced voltage dependence of an electric fish potassium channel. Biophysical Journal
- Wirthlin, M.E., […] Kosakovsky Pond, S.L. […] Pfenning, A.R. (2024) Vocal learning-associated convergent evolution in mammalian proteins and regulatory elements. Science, eabn3263
February 2024
- Babaian, C. and Kumar, S. (2024) Of Phylogenies and Tumors: Cancer as a Model System to Teach Evolution. The American Biology Teacher 86 (2), 62-70
- Bonfim, M., López, D.P., Repetto, M.F. and Freestone, A.L. (2024) Speed and degree of functional and compositional recovery varies with latitude and community age. Ecology, e4259
- Cepeda, A.S., Mello, B., Pacheco, M.A., Luo, Z., Sullivan, S.A., Carlton, J.M. and Escalante, A.A. (2024) The genome of Plasmodium gonderi: Insights into the evolution of human malaria parasites. Genome Biology and Evolution, evae027
- Junod, S.L., Tingey, M., Kelich, J., Goryaynov, A., Herbine, K. and Yang, W. (2024) Nuclear export dynamics of pre-ribosomal subunits revealed by high-speed single-molecule microscopy in live cells. Biophysical Journal 123 (3), 180a
- Kaniper, S., Lynch, D., Owens, S.M., Ibric, L., Vabishchevich, Y., Nyantakyi, N., Chun, F., Sam, L., Fabrizio, C., Hamad, E. and Gerhard, G.S. (2024) Non-Cardiac Amyloidosis Findings Are Not Increased in African American Carriers of TTR V142I with Heart Failure and/or Arrhythmia. Journal of Personalized Medicine, 14(3), p.271
- Kim, H. (2024) Running a summer journal club for an interdisciplinary community: how to maintain engagement when members have disparate prior knowledge. The Journal for Research and Practice in College Teaching 8 (2)
- Oliveto, S., Ritter, P., Deroma, G., Miluzio, A., Cordiglieri, C., Benvenuti, M.R., Mutti, L., Raimondi, M.T. and Biffo, S. (2024) The Impact of 3D Nichoids and Matrix Stiffness on Primary Malignant Mesothelioma Cells. Genes, 15(2), p.199
- Suma, A., Sigg, D., Gallagher, S., Gonnella, G. and Carnevale, V. (2024) Ion channels in critical membranes: clustering, cooperativity, and memory effects. P R X Life 2, 013007
- Yu, W., Tingey, M., Kelich, J., Li, Y., Yu, J., Junod, S.L., Jiang, Z., Hansen, I., Good, N. and Yang, W. (2024) Mapping intrinsically disordered proteins in live cells by high-speed super-resolution light microscopy. Biophysical Journal 123 (3), 70a
January 2024
- Assis, R., Conant, G., Holland, B., Liberles, D.A., O'Reilly, M.M. and Wilson, A.E. (2024) Models for the retention of duplicate genes and their biological underpinnings. F1000Research, 12.
- Barbarino, M., Bellan, C., Pesetti, M., Bottaro, M., Tomassetti, C., Insinga, G., Burk, S., Arcuri, F., Paladini, P., Graziano, A. and Giordano, A. (2024) Comparison of two mechanical disaggregation methods of fresh lung tissues for extraction of high-quality RNA. Instrumentation Science & Technology, pp.1-13.
- Betters, M.J. and Cordes, E.E. (2024) New records of Provanna (Gastropoda, Provannidae) from the Costa Rica Margin and an identification key for the genus. ZooKeys, 1189, pp.1-32.
- Cersosimo, F., Lonardi, S., Ulivieri, C., Martini, P., Morrione, A., Vermi, W., Giordano, A. and Giurisato, E. (2024) CSF-1R in cancer: More than a myeloid cell receptor. Cancers, 16(2), p.282.
- Dabrowski, K.R., Floris, G., Gillespie, A. and Sillivan, S.E. (2024) Orbitofrontal intronic circular RNA from Nrxn3 mediates reward learning and motivation for reward. Progress in Neurobiology, 232, p.102546.
- Luedtke, J.A., […] S Blair Hedges […] Stuart, S.N. (2024) Erratum: Author Correction: Ongoing declines for the world's amphibians in the face of emerging threats (Nature (2023) 622 7982 (308-314)). Nature
- Maurer-Alcalá, X.X., Cote-L’Heureux, A., Kosakovsky Pond, S.L. and Katz, L.A. (2024) Somatic genome architecture and molecular evolution are decoupled in “young” linage-specific gene families in ciliates. Plos one, 19(1), p.e0291688.
- Sowers, D.C., Mayer, L.A., Masetti, G., Cordes, E.E., Gasbarro, R., Lobecker, E., Cantwell, K., Candio, S., Hoy, S., Malik, M., White, M. and Dornback, M. (2024) Mapping and Geomorphic Characterization of the Vast Cold-Water Coral Mounds of the Blake Plateau. Geomatics, 4(1), pp.17-47.
- Weisman, C.M., Minh, B.Q. and Liberles, D.A. (2024) 2023 Zuckerkandl Prize. J Mol Evol. https://doi.org/10.1007/s00239-024-10153-4
- Xu, P., Wang, R., Zhang, H., Carnevale, V., Borguet, E. and Suntivich, J. (2024) Cation Modifies Interfacial Water Structures on Platinum during Alkaline Hydrogen Electrocatalysis. Journal of the American Chemical Society.
- Zhang, N., Wang, F., Yang, X., Wang, Q., Chang, R., Zhu, L., Feitelson, M.A. and Chen, Z. (2024) TMEM43 promotes the development of hepatocellular carcinoma by activating VDAC1 through USP7 deubiquitination. Translational Gastroenterology and Hepatology.
2023
December 2023
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- Costagliola, A., Lombardi, R., Liguori, G., Morrione, A. and Giordano, A., (2023) Orexins and Prostate Cancer: State of the Art and Potential Experimental and Therapeutic Perspectives. Cancer Genomics & Proteomics, 20(6suppl), pp.637-645.
- Craig, J.M., Bamba, G.L., Barba, J., Hedges, S.B. and Kumar, S., (2023) Completing a molecular timetree of apes and monkeys. Frontiers in Bioinformatics, 3, p.1284744.
- Craig, J.M., Gerhard, G.S., Sharma, S., Yankovskiy, A., Miura, S. and Kumar, S., (2023) Methods for Estimating Personal Disease Risk and Phylogenetic Diversity of Hematopoietic Stem Cells. Molecular Biology and Evolution, p.msad279.
- Dabrowski, K.R., Floris, G., Gillespie, A. and Sillivan, S.E., (2024) Orbitofrontal intronic circular RNA from Nrxn3 mediates reward learning and motivation for reward. Progress in Neurobiology, 232, p.102546.
- Elli, S., Raffaini, G., Guerrini, M., Kosakovsky Pond, S. and Matrosovich, M., (2023) Molecular modeling and phylogenetic analyses highlight the role of amino acid 347 of the N1 subtype neuraminidase in influenza virus host range and interspecies adaptation. Frontiers in Microbiology, 14, p.1309156.
- Galati, S., Di Stefano, M., Bertini, S., Granchi, C., Giordano, A., Gado, F., Macchia, M., Tuccinardi, T. and Poli, G., (2023) Identification of New GSK3β Inhibitors through a Consensus Machine Learning-Based Virtual Screening. International Journal of Molecular Sciences, 24(24), p.17233.
- Princiotta, S.D., Nguyen, T. and Sanders, R.W., (2023) High abundances and negligible grazing during winter by the mixotrophic chrysophyte Dinobryon. Fottea, 23(2), pp.201-207.
- Singh, A., Singh, M.P., Ali, N.A., Poriya, R., Rajvanshi, H., Nisar, S., Bhandari, S., Sahu, R.S., Jayswar, H., Mishra, A.K., Das, A., Kaur, H., Anvikar, A.R., Escalante, A.A., Lal A.A. and Bharti, P.K., (2023) Assessment of Plasmodium falciparum drug resistance associated molecular markers in Mandla, Madhya Pradesh, India. Malaria Journal, 22(1), p.375.
- Tingey, M., Junod, S.L., Rush, C. and Yang, W., (2024) Protocol for live-cell super-resolution imaging of transport of pre-ribosomal subunits through the nuclear pore complex. STAR protocols, 5(1), p.102790.
- Wagner, A.M., Kostina, N.Y., Xiao, Q., Klein, M.L., Percec, V. and Rodriguez-Emmenegger, C., (2023) Glycan-Driven Formation of Raft-Like Domains with Hierarchical Periodic Nanoarrays on Dendrimersome Synthetic Cells. Biomacromolecules.
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November 2023
- Cordes, E.E., Demopoulos, A.W., Davies, A.J., Gasbarro, R., [...] Weinnig, A.M. [...]Lunden,J.J. [...]Betters, M.J. [...] Rasser, M.K. and Adams, C. (2023) Expanding our view of the cold-water coral niche and accounting of the ecosystem services of the reef habitat. Scientific Reports 13 (1), 19482.
- Mancarella, C., Morrione, A. and Scotlandi, K., (2023) PROTAC-Based Protein Degradation as a Promising Strategy for Targeted Therapy in Sarcomas. International Journal of Molecular Sciences 24 (22), 16346.
- Rush, C., Jiang, Z., Tingey, M., Feng, F. and Yang, W., (2023) Unveiling the complexity: assessing models describing the structure and function of the nuclear pore complex. Frontiers in Cell and Developmental Biology 11.
- Spinetta, R., Petrillo, F., Reibaldi, M., Tortori, A., Mazzoni, M., Metrangolo, C., Gelormini, F., Ricardi, F. and Giordano, A., (2023) Intravitreal DEX Implant for the Treatment of Diabetic Macular Edema: A Review of National Consensus. Pharmaceutics 15 (10), 2461.
- Taenzer, L., Wankel, S.D., Kapit, J., Pardis, W.A., Herrera, S., Auscavitch, S., Grabb, K.C., Cordes, E. and Hansel, C.M., (2023) Corals and Sponges are Hotspots of Reactive Oxygen Species in the Deep Sea. PNAS Nexus, pgad398.
October 2023
- Canfora, E.E., Feitelson, M.A. and Arzumanyan, A., (2023) Editorial: Microbiome metabolites in health and disease. Frontiers in microbiology 14.
- Cheng, Z., Lei, L., Zhao, B., Zhu, Y., Yu, T., Yang, W., et al. (2023) High performance reversible thermochromic composite films with wide thermochromic range and multiple colors based on micro/nanoencapsulated phase change materials for temperature indicators. Compos. Sci. Technol., 110091.
- De Bona, S., Barringer, L., Kurtz, P., Losiewicz, J., Parra, G.R. and Helmus, M.R., (2023) lydemapr: an R package to track the spread of the invasive spotted lanternfly (Lycorma delicatula, White 1845) (Hemiptera, Fulgoridae) in the United States. NeoBiota 86, 151-168.
- Delavaux, C.S., […] Bonfim, M. [….] Cortese, M. […] Freestone, A.L. […] Averill, C. (2023) Mycorrhizal feedbacks influence global forest structure and diversity. Communications Biology 6 (1), 1066.
- Guerler, A., Baker, D., van den Beek, M., Gruening, B., Bouvier, D., Coraor, N., Shank, S.D., Zehr, J.D., Schatz, M.C. and Nekrutenko, A., (2023) Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy. BMC bioinformatics 24 (1), 263.
- Kosakovsky Pond, S.L. and Martin, D., (2023) Anti-COVID drug accelerates viral evolution. Nature.
- Lucaci, A.G., Zehr, J.D., Enard, D., Thornton, J.W. and Kosakovsky Pond, S.L. (2023) Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses. Molecular Biology and Evolution 40 (7), msad150.
- Luedtke, J.A., […] S Blair Hedges […] Stuart, S.N. (2023) Ongoing declines for the world’s amphibians in the face of emerging threats. Nature, 1-7.
- Mutti, L. and Gray, S.G. (2023) Editorial: Editor's challenge: Dr. Luciano Mutti-what is the true impact of ICIs on survival in the treatment of thoracic malignancies?. Frontiers in Oncology 13, 1285031.
- Swartz, T.M., Gleditsch, J.M. and Behm, J.E., (2023) A functional trait approach reveals the effects of landscape context on ecosystem services provided by urban birds. Landscape and Urban Planning 234, 104724.
- Zehr, J.D., Kosakovsky Pond, S.L., Millet, J.K., Olarte-Castillo, X.A., Lucaci, A.G., Shank, S.D., Ceres, K.M., Choi, A., Whittaker, G.R., Goodman, L.B. and Stanhope, M.J., (2023) Natural selection differences detected in key protein domains between non-pathogenic and pathogenic feline coronavirus phenotypes. Virus Evolution 9 (1), vead019.
September 2023
- Betters, M., Stabbins, A., Keller, A., & Cordes, E. (2023) Biogeography and depth partitioning in deep‐sea gastropods at the Pacific Costa Rica Margin. Journal of Biogeography.
- Craig, J.M., Kumar, S. and Hedges, S.B. (2023) The origin of eukaryotes and rise in complexity were synchronous with the rise in oxygen. Frontiers in Bioinformatics 3.
- Darbinian, N., Gallia, G.L., Darbinyan, A., Vadachkoria, E., Merabova, N., Moore, A., Goetzl, L., Amini, S. and Selzer, M.E. (2023) Effects of In Utero EtOH Exposure on 18S Ribosomal RNA Processing: Contribution to Fetal Alcohol Spectrum Disorder. International Journal of Molecular Sciences 24 (18), 13714.
- Inzaule, S.C., Siedner, M.J., Little, S.J., Avila-Rios, S., Ayitewala, A., Bosch, R.J., Calvez, V., Ceccherini-Silberstein, … Sergei L. Kosakovsky Pond … Robert W. ShaferI (2023) Recommendations on data sharing in HIV drug resistance research. PLoS medicine 20 (9), e1004293.
- Russo, V., Falco, L., Tessitore, V., Mauriello, A., Catapano, D., Napolitano, N., Tariq, M., Caturano, A., Ciccarelli, G., D’Andrea, A. and Giordano, A. (2023) Anti-Inflammatory and Anticancer Effects of Anticoagulant Therapy in Patients with Malignancy. Life 13 (9), 1888.
- Vieira, L.M.D.C., Pereira, P.H.O., da Rocha Vilela, D.A., Landau, I., Pacheco, M.A., Escalante, A.A., Ferreira, F.C. and Braga, É.M., (2023) Leucocytozoon cariamae n. sp. and Haemoproteus pulcher coinfection in Cariama cristata (Aves: Cariamiformes): First mitochondrial genome analysis and morphological description of a leucocytozoid in Brazil.. Parasitology, 1-41.
August 2023
- Belouard, N., & Behm, J. E. (2023). Multiple paternity in the invasive spotted lanternfly (Hemiptera: Fulgoridae). Environmental Entomology, nvad083.
- Carvalho, N. F., Waters, L.G., Arantes, R. C. M., Couto, D. M., Cavalcanti, G. H., Güth, A. Z., Falcão, A. P. C., Nagata, P. D., Hercos, C. M., Sasaki, D. K., Dottori, M., Cordes, E. E., & Sumida, P. Y. G. (2023). Underwater surveys reveal deep-sea corals in newly explored regions of the southwest Atlantic. Communications Earth & Environment, 4(1), 282.
- Caturano, A., D’Angelo, M., Mormone, A., Russo, V., Mollica, M. P., Salvatore, T., Galiero, R., Rinaldi, L., Vetrano, E., Marfella, R., Monda, M., Giordano, A., & Sasso, F. C. (2023). Oxidative Stress in Type 2 Diabetes: Impacts from Pathogenesis to Lifestyle Modifications. Current Issues in Molecular Biology, 45(8), 6651-6666.
- Darbinian, N., Darbinyan, A., Merabova, N., Kassem, M., Tatevosian, G., Amini, S., ... & Selzer, M. E. (2023). In utero ethanol exposure induces mitochondrial DNA damage and inhibits mtDNA repair in developing brain. Frontiers in Neuroscience, 17.
- Harman, J., Hipsley, C. A., Jacobus, L. M., Liberles, D. A., Settele, J., & Traulsen, A. (2023). 2023 BMC Ecology and Evolution image competition: the winning images. BMC Ecology and Evolution, 23(1), 1-7.
- Li, C., Xu, A.J., Beery, E., Hsieh, S.T. and Kane, S.A. (2023) Putting a new spin on insect jumping performance using 3D modeling and computer simulations of spotted lanternfly nymphs. Journal of Experimental Biology
- Miura, S., Dolker, T., Sanderford, M., & Kumar, S. (2023). Improving cellular phylogenies through the integrated use of mutation order and optimality principles. Computational and Structural Biotechnology Journal.
- Zhang, C., Yue, S., Panagiotopoulos, A. Z., Klein, M. L., & Wu, X. (2023). Why Dissolving Salt in Water Decreases Its Dielectric Permittivity. Physical Review Letters, 131(7), 076801.
July 2023
- Barba-Montoya, Jose, Sudip Sharma, Sudhir Kumar (2023) Molecular timetrees using relaxed clocks and uncertain phylogenies.Frontiers in Bioinformatics 3, 1225807.
- Carroll, Elizabeth W. , Amy L. Freestone (2023) Habitat isolation interacts with top-down and bottom-up processes in a seagrass ecosystem.Plos one 18 (7), e0289174.
- Chmielewski, Matthew W., Skyler Naya, Monica Borghi, Jen Cortese, Alisdair R. Fernie, Mark T. Swartz, Konstantina Zografou, Brent J. Sewall, Rachel B. Spigler (2023) Phenology and foraging bias contribute to sex‐specific foraging patterns in the rare declining butterfly Argynnis idalia idalia.Ecology and Evolution 13 (7), e10287.
- Darbinian, Nune, Emily C. Sparks, Armine Darbinyan, Nana Merabova, Gabriel Tatevosian, Ekaterina Vadachkoria, Huaqing Zhao, Shohreh Amini, Laura Goetzl, Michael E. Selzer. (2023) Maternal Blood Lipid Biomarkers of Oligodendrocyte Pathology to Predict Fetal Alcohol Spectrum Disorders.Obstetrics and Gynecology Research 6 (2), 127-138.
- Darbinian, Nune, Emily C. Sparks, Armine Darbinyan, Nana Merabova, Tamara Tatevosian-Geller, Katie Calaku, Sarah Bachman, Huaqing Zhao, Shohreh Amini, Laura Goetzl, Solomon P. Samuel, Amer Samdani, Michael E. Selzer.(2023) Exosomal Lipid Biomarkers of Oligodendrocyte Pathology to Predict Scoliosis in Children with Cerebral Palsy.Obstetrics and Gynecology Research 6 (2), 160-171.
- Feitelson, Mark A., Alla Arzumanyan, Arvin Medhat & Ira Spector (2023) Short-chain fatty acids in cancer pathogenesis.Cancer and Metastasis Reviews, 1-22.
- Joyce, Collin, Sasha Murrell, Ben Murrell, Oluwarotimi Omorodion, Lorena S. Ver, Nancy Carrico, Raiza Bastidas, Rebecca Nedellec, Michael Bick, Jordan Woehl, Fangzhu Zhao, Alison Burns, Shawn Barman, Michael Appel, Alejandra Ramos, Lalinda Wickramasinghe, Kemal Eren, Thomas Vollbrecht, Davey M. Smith, Sergei L. Kosakovsky Pond, Ryan McBride, Charli Worth, Facundo Batista, Devin Sok, The IAVI Protocol C Investigators & The IAVI African HIV Research Network , Pascal Poignard, Bryan Briney, Ian A. Wilson, Elise Landais , Dennis R. Burton (2023) Antigen pressure from two founder viruses induces multiple insertions at a single antibody position to generate broadly neutralizing HIV antibodies.PLoS Pathogens 19 (6), e1011416.
- Junod, Samuel L., Mark Tingey, Joseph M. Kelich, Alexander Goryaynov, Karl Herbine, Weidong Yang (2023) Dynamics of nuclear export of pre-ribosomal subunits revealed by high-speed single-molecule microscopy in live cells. iScience.
- Luzuriaga-Neira, Agusto R., Andrew M. Ritchie, Bryan L. Payne, Oliver Carrillo-Parramon, David A. Liberles, and David Alvarez-Ponce (2023) Highly Abundant Proteins Are Highly Thermostable.Genome Biology and Evolution 15 (7), evad112.
- Means, D. Bruce, Matthew P. Heinicke, S. Blair Hedges, Ross D. Macculloch, Amy Lathrop (2023) Exceptional diversity of Pristimantis Landfrogs (Anura: Terraranae) on the Wokomung Massif, Guyana, with descriptions of three new species.Journal of Vertebrate Biology 72 (23026), 23026.1-26.
- Ose, Nicholas J., Paul Campitelli, Ravi Patel, Sudhir Kumar, S. Banu Ozkan (2023) Protein dynamics provide mechanistic insights about epistasis among common missense polymorphisms.Biophysical journal.
- Phophi, Lufuno, Mohamed A. Abouelkhair, Rebekah Jones, Jordan Zehr, Stephen A. Kania (2023) Temporal changes in antibiotic resistance and population structure of methicillin-resistant Staphylococcus pseudintermedius between 2010 and 2021 in the United States.Comparative Immunology, Microbiology and Infectious Diseases, 102028.
- Princiotta, Sarah DeVaul, Andrew VanKuren, Craig E. Williamson, Robert W. Sanders, Macarena S. Valiñas (2023) Disentangling the role of light and nutrient limitation on bacterivory by mixotrophic nanoflagellates. Journal of Phycology.
- Ventura, E., Belfiore, A., Iozzo, R.V., Giordano, A. and Morrione, A. (2023) Progranulin and EGFR modulate RYK (Receptor like Tyrosine Kinase) sorting and stability in mesothelioma cell. American Journal of Physiology-Cell Physiology 325(2), C391-C405
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June 2023
- Barone, D., Iannuzzi, C. A., Forte, I. M., Ragosta, M. C., Cuomo, M., Dell’Aquila, M., et al. [Antonio Giordano] (2023). The hydrophilic extract from a new tomato genotype (named DHO) kills cancer cell lines through the modulation of the DNA damage response induced by Campthotecin treatment. Front. Oncol. 13, 1117262.
- Cao, A., Li, Q., Yang, W., and Zhang, Z. (2023). Frequency shifting of transmitted ultrasound in thick composites containing fiber wrinkles and its application in non-destructive evaluation. Compos. Struct. 314, 116939.
- Chikelu, C. W., Berns, M., Conover, D., Habas, R., Han, L., Street, R. M., et al. (2023). Collagen Nanoyarns: Hierarchical Three-Dimensional Biomaterial Constructs. Biomacromolecules 24, 1155–1163.
- Curigliano, G., Shapiro, G. I., Kristeleit, R. S., Abdul Razak, A. R., Leong, S., Alsina, M., et al. [Antonio Giordano] (2023). A Phase 1B open-label study of gedatolisib (PF-05212384) in combination with other anti-tumour agents for patients with advanced solid tumours and triple-negative breast cancer. Br. J. Cancer 128, 30–41.
- Curigliano, G., Shapiro, G. I., Kristeleit, R. S., Razak, A. R. A., Leong, S., Alsina, M., et al. [Antonio Giordano] (2023). Correction to: A Phase 1B open-label study of gedatolisib (PF-05212384) in combination with other anti-tumour agents for patients with advanced solid tumours and triple-negative breast cancer. Br. J. Cancer 128, 400.
- DelloStritto, M. J., Kaplan, A. D., Perdew, J. P., and Klein, M. L. (2023). Predicting the properties of NiO with density functional theory: Impact of exchange and correlation approximations and validation of the r2SCAN functional. APL Mater. 11.
- Esposito, A., Menna, D., Giordano, A. N., and Cappiello, A. P. (2023). Adjunctive techniques in endovascular repair of postcarotid endarterectomy pseudoaneurysm: Case report and literature review. Catheter. Cardiovasc. Interv. 101, 900–906.
- Fanale, D., Brando, C., Corsini, L. R., Cutaia, S., Di Donna, M. C., Randazzo, U., et al. [Antonio Giordano] (2023). Low plasma PD-L1 levels, early tumor onset and absence of peritoneal carcinomatosis improve prognosis of women with advanced high-grade serous ovarian cancer. BMC Cancer 23, 437.
- Huzar, J., Shenoy, M., Sanderford, M. D., Kumar, S., and Miura, S. (2023). Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data. Front. Bioinforma. 3, 1090730.
- Incorvaia, L., Dimino, A., Algeri, L., Brando, C., Magrin, L., De Luca, I., et al. [Antonio Giordano] (2023). Body mass index and baseline platelet count as predictive factors in Merkel cell carcinoma patients treated with avelumab. Front. Oncol. 13, 1141500.
- Millette, N. C., Gast, R. J., Luo, J. Y., Moeller, H. V, Stamieszkin, K., Andersen, K. H., et al. [Robert W Sanders] (2023). Mixoplankton and mixotrophy: future research priorities. J. Plankton Res., fbad020.
- Ruiz-Whalen, D. M., Aichele, C. P., Dyson, E. R., Gallen, K. C., Stark, J. V, Saunders, J. A., et al. [Raymond Habas] (2023). “Gaining Wings to FLY: Using Drosophila Oogenesis as an Entry Point for Citizen Scientists in Laboratory Research,” in Drosophila Oogenesis: Methods and Protocols (Springer), 399–444.
- Scalia, P., Williams, S. J., Suma, A., and Carnevale, V. (2023). The DTX Protein Family: An Emerging Set of E3 Ubiquitin Ligases in Cancer. Cells 12, 1680.
- Tian, J., Liu, M., Xiao, H., Zhang, Z., Yang, W., Long, Z., et al. (2023). Optimized ultrasonic total focusing imaging of diverse and multiple defects in crossply CFRP: Floquet wave theory, numerical simulation, and experimental validation. Mech. Syst. Signal Process. 199, 110486.
- Wang, X., Xu, T., Peckmann, J., Bayon, G., Jia, Z., Gong, S., et al. [Erik Cordes] (2023). Molybdenum isotope signature of microbial nitrogen utilization in siboglinid tubeworms. Geology.
- Yu, W., Rush, C., Tingey, M., Junod, S., and Yang, W. (2023). Application of Super-resolution SPEED Microscopy in the Study of Cellular Dynamics. Chem. \& Biomed. Imaging.
- Zhang, Z., Cao, A., Li, Q., Yang, W., and Li, Y. (2023). Imaging of Fiber Waviness in Thick Composites with Unknown Material Properties Using Probability-Based Ultrasound Non-Reciprocity. Materials (Basel). 16, 3786.
May 2023
- Chothe, S. K., Jakka, P., Boorla, V. S., Ramasamy, S., Gontu, A., Nissly, R. H., et al. [Brent Sewal] (2023). Little Brown Bats (Myotis lucifugus) Support the Binding of SARS-CoV-2 Spike and Are Likely Susceptible to SARS-CoV-2 Infection. Viruses 15, 1103.
- Dash, P. K., Chen, C., Kaminski, R., Su, H., Mancuso, P., Sillman, B., et al. [Shohreh Amini] (2023). CRISPR editing of CCR5 and HIV-1 facilitates viral elimination in antiretroviral drug-suppressed virus-infected humanized mice. Proc. Natl. Acad. Sci. 120, e2217887120.
- Di Fiore, R., Suleiman, S., Drago-Ferrante, R., Subbannayya, Y., Suleiman, S., Vasileva-Slaveva, M., et al. [Antonio Giordano] (2023). The Role of FBXW7 in Gynecologic Malignancies. Cells 12, 1415.
- Escalera-Zamudio, M., Kosakovsky Pond, S. L., de la Viña, N., Gutiérrez, B., Inward, R. P. D., Thézé, J., et al. (2023). Identification of evolutionary trajectories shared across human betacoronaviruses. Genome Biol. Evol., evad076.
- Feitelson, M., and Arzumanyan, A. (2023). Liver Cancer. Rijeka: IntechOpen doi:10.5772/intechopen.100845.
- Kagawa, S., Tanabe, K., Hiromura, M., Ogawa, K., Koga, T., Maeda, T., et al. [Antonio Giordano] (2023). Hachimijiogan, a traditional herbal medicine, modulates adipose cell function and ameliorates diet-induced obesity and insulin resistance in mice. Front. Pharmacol. 14. doi:10.3389/fphar.2023.1167934.
- Kaiser, S., Stransky, B., Jennings, R. M., Kihara, T. C., and Brix, S. (2023). Combining morphological and mitochondrial DNA data to describe a new species of Austroniscus Vanhöffen, 1914 (Isopoda, Janiroidea, Nannoniscidae) linking abyssal and hadal depths of the Puerto Rico Trench. Zootaxa 5293, 401–434. doi:10.11646/zootaxa.5293.3.1.
- Liguori, G., Costagliola, A., Lombardi, R., Paciello, O., and Giordano, A. (2023). Human-Animal Interaction in Animal-Assisted Interventions (AAI) s: Zoonosis Risks, Benefits, and Future Directions—A One Health Approach. Animals 13, 1592.
- Liu, H., Chen, C., Liao, S., Sohaii, D. K., Cruz, C. R. Y., Burdo, T. H., et al. [Shohreh Amini] (2023). Strategic self-limiting production of infectious HIV particles by CRISPR in permissive cells. Mol. Ther. Acids.
- Pacheco, M. A., and Escalante, A. A. (2023). Origin and diversity of malaria parasites and other Haemosporida. Trends Parasitol. doi:10.1016/j.pt.2023.04.004.
- Wilson, A. E., and Liberles, D. A. (2023). Dosage balance acts as a time-dependent selective barrier to subfunctionalization. BMC Ecol. Evol. 23, 14.
- Yamamoto, K., Ohsiro, Y., Suzuki, T., Suzuki, M., Miura, S., Nagashima, M., et al. (2023). Validation of the severe COVID-19 prognostic value of serum IL-6, IFN-$λ$3, CCL17, and calprotectin considering the timing of clinical need for prediction. PLoS One 18, e0279897.
April 2023
- Benvenuto, M., Angiolini, V., Focaccetti, C., Nardozi, D., Palumbo, C., Carrano, R., et al. [Luciano Mutti] (2023). Antitumoral effects of Bortezomib in malignant mesothelioma: evidence of mild endoplasmic reticulum stress in vitro and activation of T cell response in vivo. Biol. Direct 18, 1–20.
- Blum, T. G., Morgan, R. L., Durieux, V., Chorostowska-Wynimko, J., Baldwin, D. R., Boyd, J., et al. [Luciano Mutti] (2023). European Respiratory Society guideline on various aspects of quality in lung cancer care. Eur. Respir. J. 61.
- Dai, T., Du, Y., Cromley, J., Fechter, T., and Nelson, F. (2023). Analytic Approaches to Handle Missing Data in Simple Matrix Sampling Planned Missing Designs. J. Exp. Educ., 1–28.
- Farshad, M., DelloStritto, M. J., Suma, A., and Carnevale, V. (2023). Detecting Liquid--Liquid Phase Separations Using Molecular Dynamics Simulations and Spectral Clustering. J. Phys. Chem. B.
- Hazra, A., O’Hara, A., Polyak, K., Nakhlis, F., Harrison, B. T., Giordano, A., et al. (2023). Copy Number Variation in Inflammatory Breast Cancer. Cells 12, 1086.Liberles, D. A. (2023). A Genomic Conceptualization of Species. J. Mol. Evol., 1–3.
- Pentimalli, F., Krstic-Demonacos, M., Costa, C., Mutti, L., and Bakker, E. (2023). Intratumor microbiota as a novel potential prognostic indicator in mesothelioma. Front. Immunol. 14.
- Rahouma, M., Baudo, M., Zhang, J., and Mutti, L. (2023). Editorial: Prognostic factors in non-small cell lung cancer. Front. Oncol. 13. doi:10.3389/fonc.2023.1174625.
- Ren, W., Yuan, Y., Li, Y., Mutti, L., Peng, J., and Jiang, X. (2023). The function and clinical implication of YTHDF1 in the human system development and cancer. Biomark. Res. 11, 1–13.
- Scalia, P., Merali, C., Barrero, C., Suma, A., Carnevale, V., Merali, S., et al. (2023). Novel Isoform DTX3c Associates with UBE2N-UBA1 and Cdc48/p97 as Part of the EphB4 Degradation Complex Regulated by the Autocrine IGF-II/IRA Signal in Malignant Mesothelioma. Int. J. Mol. Sci. 24, 7380.
- Spitz, S., Cremer, I., Kotwal, A., Correale, P., Botta, C., Fameli, A., et al. [Antonio Giordano] (2023). Giuseppe Giaccone, Cornell University, United States. Progn. factors non-small cell lung cancer, 448.
- Tang, P. K., Khatua, P., Carnevale, V., and Loverde, S. M. (2023). Exploration of the Nucleation Pathway for Supramolecular Fibers. J. Chem. Inf. Model.
- Tao, K., Rhee, S.-Y., Tzou, P. L., Osman, Z. A., Pond, S. L. K., Holmes, S. P., et al. (2023). HIV-1 Group M Capsid Amino Acid Variability: Implications for Sequence Quality Control of Genotypic Resistance Testing. Viruses 15, 992.
- Tossetta, G., Fantone, S., Busilacchi, E. M., Di Simone, N., Giannubilo, S. R., Scambia, G., et al. [Antonio Giordano] (2023). Correction to: Modulation of matrix metalloproteases by ciliary neurotrophic factor in human placental development. Cell Tissue Res.
- Ventura, E., Iozzo, R., Belfiore, A., Giordano, A., and Morrione, A. (2023). Progranulin modulates RYK and EGFR activity in mesothelioma cells. J. Biol. Chem. 299, S731.
- Zhang, S., Srivastava, A., Li, W., Rijpkema, S. J., Carnevale, V., Klein, M. L., et al. (2023). Molecular Engineering of pH-Responsive Anchoring Systems onto Poly (ethylene glycol) Corona. J. Am. Chem. Soc.
March 2023
- Albukhaytan, H., Torkzaban, B., Sariyer, I. K., and Amini, S. (2023). PurA sensitizes cells to toxicity induced by oxidative stress. NeuroImmune Pharmacol. Ther.
- Boudeau, S., Ramakodi, M. P., Zhou, Y., Liu, J. C., Ragin, C., and Kulathinal, R. J. (2023). Extensive set of African ancestry-informative markers (AIMs) to study ancestry and population health. Front. Genet. 14.
- Levin, L. A., Alfaro-Lucas, J. M., Colaço, A., Cordes, E. E., Craik, N., Danovaro, R., et al. (2023). Deep-sea impacts of climate interventions. Science (80-. ). 379, 978–981.
- Ponce-Chazarri, L., Ponce-Blandón, J. A., Immordino, P., Giordano, A., and Morales, F. (2023). Barriers to Breast Cancer-Screening Adherence in Vulnerable Populations. Cancers (Basel). 15, 604.
- Ruba, A., Tingey, M., Luo, W., Yu, J., Evangelou, A., Higgins, R., et al. [Weidong Yang] (2023). The Ciliary Lumen Accommodates Passive Diffusion and Vesicle-Assisted Trafficking in Cytoplasm-Ciliary Transport. Mol. Biol. Cell, mbc--E22.
- Silva, S. R., Miranda, V. F. O., Michael, T. P., Płachno, B. J., Matos, R. G., Adamec, L., et al. [Sergei Pond] (2023). The phylogenomics and evolutionary dynamics of the organellar genomes in carnivorous Utricularia and Genlisea species (Lentibulariaceae). Mol. Phylogenet. Evol., 107711.
- Ventura, E., Ducci, G., Benot Dominguez, R., Ruggiero, V., Belfiore, A., Sacco, E., et al. [Andrea Morrione, Antonio Giordano] (2023). Progranulin Oncogenic Network in Solid Tumors. Cancers (Basel). 15, 1706.
- Yang, W., Liu, M., Chen, S., Kang, W., Chen, J., and Li, Y. (2023). Electromechanical analysis of a self-sensing torsional micro-actuator based on CNTs reinforced piezoelectric composite with damage. Compos. Struct., 116945.
February 2023
- Belouard, N., and Behm, J. E. (2023). Spotted! Computer-aided individual photo-identification allows for mark-recapture of invasive spotted lanternfly (Lycorma delicatula). Front. Insect Sci. 3, 9.
- Bien, T., Alexander, B.H., White, E., Hsieh, S.T. and Kane, S.A. (2023) Sizing up spotted lanternfly nymphs for instar determination and growth allometry. Plos one 18 (2), e0265707
- Bravo, M. E., Brandt, M. I., Der Grient, V., Jesse, M. A., Dahlgren, T. G., Esquete Garrote, P., et al. [Erik Cordes] (2023). Insights from the management of offshore energy resources: Towards an ecosystem-services based management approach for deep-ocean industries. Front. Mar. Sci. 9, 2576.
- Chebaane, S., Freestone, A. L., Des Pérez, A., Sempere-Valverde, J., Chainho, P., Monteiro, J. G., et al. (2023). Predation facilitates the abundance of biofouling non-indigenous species in estuarine marinas in NE Atlantic Portugal. Mar. Pollut. Bull. 188, 114724.
- Coronel, L., Vouga, A. G., Rothberg, B. S., and Carnevale, V. (2023). Role of lipids in hydrophobic gating and blocker affinity in BK channels. Biophys. J. 122, 13a.
- Flammia, R. S., Tufano, A., Chierigo, F., Würnschimmel, C., Hoeh, B., Sorce, G., et al. [Andrea Morrione] (2023). The Effect of Sex on Disease Stage and Survival after Radical Cystectomy in Non-Urothelial Variant-Histology Bladder Cancer. J. Clin. Med. 12, 1776.
- Junod, S. L., and Yang, W. (2023). The role of O-GlcNAcylation in mRNA nuclear export studied by single-molecule super-resolution microscopy. Biophys. J. 122, 193a.
- Junod, S. L., Tingey, M., Rush, C., Alkurdi, A., Bajoria, K., and Yang, W. (2023). Obtaining 3D super-resolution images by utilizing rotationally symmetric structures and 2D-to-3D transformation. Comput. Struct. Biotechnol. J.
- Malavazos, A. E., Iacobellis, G., Dozio, E., Basilico, S., Di Vincenzo, A., Dubini, C., et al. [Antonio Giordano] (2023). Human Epicardial Adipose Tissue Expresses Glucose-dependent Insulinotropic Polypeptide, Glucagon and Glucagon-Like Peptide 1 Receptors as Potential Targets of Pleiotropic Therapies. Eur. J. Prev. Cardiol., zwad050.
- Nardone, V., Romeo, C., D’Ippolito, E., Pastina, P., D’Apolito, M., Pirtoli, L., et al. [Luciano Mutti, Antonio Giordano] (2023). The role of brain radiotherapy for EGFR-and ALK-positive non-small-cell lung cancer with brain metastases: a review. Radiol. Med., 1–14.
- Sewall, B. J., Turner, G. G., Scafini, M. R., Gagnon, M. F., Johnson, J. S., Keel, M. K., et al. (2023). Environmental control reduces white-nose syndrome infection in hibernating bats. Anim. Conserv.
- Stopar, A., and Nicholson, A. W. (2023). Multivalent forms of the ribonuclease H1 hybrid binding domain are high-affinity binders of RNA--DNA hybrids. FEBS Lett. 597, 472–482.
- Suma, A., Sigg, D., Srivastava, A., Gonnella, G., and Carnevale, V. (2023). Channel-lipid interactions drive the emergence of ion channel clustering, channel-channel cooperativity, and activation hysteresis. Biophys. J.122, 29a.
- Tingey, M., Yang, W., Zhang, B., Ruba, A., and Junod, S. (2023). Paired-objectives photon enhancement (POPE) microscopy. Biophys. J. 122, 127a.
- Troisi, N., Saratzis, A., Katsogridakis, E., Stavroulakis, K., Berchiolli, R., Zayed, H., et al. [Antonio Giordano] (2023). Different endovascular modalities of treatment for isolated atherosclerotic popliteal artery lesions (EMO-POP) registry. J. Vasc. Surg. 77, 231–240.
January 2023
- Belfiore A, Rapicavoli RV, le Moli R, Lappano R, Morrione A, de Francesco EM, Vella V (2023) IGF2: A Role in Metastasis and Tumor Evasion from Immune Surveillance? Biomedicines 11:229.
- Ciccarelli G, Conte S, Cimmino G, Maiorano P, Morrione A, Giordano A (2023) Mitochondrial Dysfunction: The Hidden Player in the Pathogenesis of Atherosclerosis? Int J Mol Sci 24:1086.
- Fan S, Zhang J, Wang B, Chen J, Yang W, Liu W, Li Y (2023) A deep learning method for fast predicting curing process-induced deformation of aeronautical composite structures. Compos Sci Technol 232:109844.
- Liberles DA (2023) The Memory Problem for Neutral Mutational Models of Evolution. J Mol Evol 91:2–5.
- Lotta-Arévalo IA, González AD, Gamboa-Suárez BA, Pacheco MA, Escalante AA, Moreno C, Rodrìguez-Fandìño O, Cuervo A, Matta NE (2023) Haemosporidians in Non-Passerine Birds of Colombia: An Overview of the Last 20 Years of Research. Diversity (Basel) 15:57.
- Osman EO, Vohsen SA, Girard F, Cruz R, Glickman O, Bullock LM, Anderson KE, Weinnig AM, Cordes EE, Fisher CR, others (2023) Capacity of deep-sea corals to obtain nutrition from cold seeps aligned with microbiome reorganization. Glob Chang Biol 29:189–205.
- Piontek SM, Naujoks D, Tabassum T, DelloStritto MJ, Jaugstetter M, Hosseini P, Corva M, Ludwig A, Tschulik K, Klein ML, others (2023) Probing the Gold/Water Interface with Surface-Specific Spectroscopy. ACS Physical Chemistry Au.
- Salvio G, Petrelli M, Paolini S, Baldini V, Sbaffi C, Basili S, Giordano A, Balercia G, Cinti S (2023) Gender-specific effects of capsiate supplementation on body weight and bone mineral density: a randomized, double-blind, placebo-controlled study in slightly overweight women. J Endocrinol Invest:1–8.
- Scalia P, Williams SJ, Fujita-Yamaguchi Y, Giordano A (2023) Cell cycle control by the insulin-like growth factor signal: at the crossroad between cell growth and mitotic regulation. Cell Cycle 22:1–37.
- Spigler R, Charles A (2023) Inbreeding reduces floral longevity and flower size in the mixed-mating biennial Sabatia angularis. Int J Plant Sci.
- Stanhope MJ, Ceres KM, Sun Q, Wang M, Zehr JD, Marra NJ, Wilder AP, Zou C, Bernard AM, Pavinski-Bitar P, others (2023) Genomes of endangered great hammerhead and shortfin mako sharks reveal historic population declines and high levels of inbreeding in great hammerhead. iScience 26:105815.
- Stanojevic M, Andjelkovic J, Kasprowicz A, Huuki LA, Chao J, Hedges SB, Kumar S, Obradovic Z (2023) Discovering research articles containing evolutionary timetrees by machine learning. Bioinformatics.
- Suma A, Carnevale V, Micheletti C (2023) Nonequilibrium thermodynamics of DNA nanopore unzipping. Phys Rev Lett 130:48101.
- Tingey M, Ruba A, Yang W (2023) High-SPEED super-resolution SPEED microscopy to study primary cilium signaling in vivo. In: Methods in cell biology. Elsevier
- Zhang C, Yue S, Panagiotopoulos A, Klein M, Wu X (2023) Origin of the dielectric decrement of salt water. Bulletin of the American Physical Society.
Previous Years
2022
- Accarino G, Giordano AN, Falcone M, Celano A, Vassallo MG, Fornino G, Bracale UM, Vecchione C, Galasso G (2022) Abdominal aortic aneurysm: natural history, pathophysiology and translational perspectives. Translational Medicine@ UniSa 24:6.
- Adedeji Olulana, A. F., Choi, D., Inverso, V., Redhu, S. K., Vidonis, M., Crevatin, L., et al. (2022). Noncanonical DNA Cleavage by BamHI Endonuclease in Laterally Confined DNA Monolayers Is a Step Function of DNA Density and Sequence. Molecules 27, 5262.
- Ali JR, Hedges SB (2022) A review of geological evidence bearing on proposed Cenozoic land connections between Madagascar and Africa and its relevance to biogeography. Earth Sci Rev 232:104103.
- Allegretti, M., Cesta, M. C., Zippoli, M., Beccari, A., Talarico, C., Mantelli, F., et al. (2022). Repurposing the estrogen receptor modulator raloxifene to treat SARS-CoV-2 infection. Cell Death \& Differ. 29, 156–166.
- Amendola A, Canuti M, Bianchi S, Kumar S, Fappani C, Gori M, Colzani D, Pond SLK, Miura S, Baggieri M, others (2022) Molecular evidence for SARS-CoV-2 in samples collected from patients with morbilliform eruptions since late 2019 in Lombardy, northern Italy. Environ Res 215:113979.
- André, T., Diaz, L. A., and Shiu, K.-K. (2022). Crossing survival curves of KEYNOTE-177 illustrate the rationale behind combining immune checkpoint inhibition with chemotherapy--Authors’ reply. Lancet Oncol. 23, e246.
- Annunziata C, Pirozzi C, Lama A, Senzacqua M, Comella F, Bordin A, Monnolo A, Pelagalli A, Ferrante MC, Mollica MP, others (2022) Palmitoylethanolamide promotes white-to-beige conversion and metabolic reprogramming of adipocytes: contribution of PPAR-α. Pharmaceutics 14:338.
- Ashton G v, Freestone AL, Duffy JE, Torchin ME, Sewall BJ, Tracy B, Albano M, Altieri AH, Altvater L, Bastida-Zavala R, others (2022) Predator control of marine communities increases with temperature across 115 degrees of latitude. Science (1979) 376:1215–1219.
- Azofeifa-Solano JC, Pereira OS, Cowell EJ, Cordes E, Levin LA, Goffredi S, Cortés J (2022) Sexual dimorphism in the methane seep-dwelling Costa Rican yeti crab Kiwa puravida (Decapoda: Anomura: Kiwaidae). Front Mar Sci:2226.
- Babaian C (2022) Fantastic Science Communication. Am Sci 110:24–27.
- Babaian C, Kumar S (2022a) Epistasis Storyboarded. Am Biol Teach 84:562–569.
- Babaian C, Kumar S (2022b) Storyboarding for Biology: An Authentic STEAM Experience. Am Biol Teach 84:328–335.
- Badalamenti G, Giordano A, Capoluongo E, Russo A, Malapelle U, Bazan V (2022) Cell-free/circulating tumor DNA profiling: from next-generation sequencing-based to digital polymerase chain reaction-based methods. Liquid Biopsy: New Challenges in the Era of Immunotherapy and Precision Oncology:168.
- Bajic M, Ravishankar S, Sheth M, Rowe LA, Pacheco MA, Patel DS, Batra D, Loparev V, Olsen C, Escalante AA, others (2022) The first complete genome of the simian malaria parasite Plasmodium brasilianum. Sci Rep 12:19802.
- Bakouny Z, Labaki C, Grover P, Awosika J, Gulati S, Hsu C-Y, Alimohamed SI, Bashir B, Berg S, Bilen MA, others (2022) Interplay of immunosuppression and immunotherapy among patients with cancer and COVID-19. JAMA Oncol.
- Barbarino M, Bottaro M, Spagnoletti L, de Santi MM, Guazzo R, Defraia C, Custoza C, Serio G, Iannelli F, Pesetti M, others (2022) Analysis of Primary Cilium Expression and Hedgehog Pathway Activation in Mesothelioma Throws Back Its Complex Biology. Cancers (Basel) 14:5216.
- Behm JE, Bélouard N, Gleditsch JM, Phillips PM, Swartz TM (2022a) Trait-based approaches for understanding how biodiversity generates sustainable benefits in urban vegetated green infrastructure. Curr Opin Environ Sustain 57:101204.
- Behm JE, Busala GM, Helmus M, others (2022b) First records of three new lizard species and a range expansion of a fourth lizard species introduced to Aruba. Bioinvasions Rec 11.
- Benndorf R, Velazquez R, Zehr JD, Pond SLK, Martin JL, Lucaci AG (2022) Human HspB1, HspB3, HspB5 and HspB8: Shaping these disease factors during vertebrate evolution. Cell Stress Chaperones 27:309–323.
- Benot-Dominguez R, Cimini A, Barone D, Giordano A, Pentimalli F (2022) The Emerging Role of Cyclin-Dependent Kinase Inhibitors in Treating Diet-Induced Obesity: New Opportunities for Breast and Ovarian Cancers? Cancers (Basel) 14:2709.
- Bergamaschi R, Beghi E, Bosetti C, Ponzio M, Santucci C, Lepore V, Mosconi P, Sclerosis IM, Group RDRC, the Scientific Committee of Italian SM, Register RD, Aguglia U, Amato MP, others (2022) Do patients’ and referral centers’ characteristics influence multiple sclerosis phenotypes? Results from the Italian multiple sclerosis and related disorders register. Neurological Sciences 43:5459–5469.
- Berns, M. L., and Habas, R. (2022). “Biochemical Assays to Detect Activation of Small GTPases Rho, Rac Rac, and Cdc42 Cdc42 during Morphogenesis Morphogenesis,” in Cell Polarity Signaling: Methods and Protocols (Springer), 83–95.
- Bucci, E., and Carafoli, E. (2022). SCIENTIFIC FRAUD Part I: Definition, General Concepts, Historical Cases. Eur. Rev. 30, 835–849.
- Burk S, Giordano A (2022) Incidence Of Breast Cancer In Ethnic Minority Groups In North America And Populations In Western Europe. Annals of Research in Oncology:116.
- Cabezas-Bratesco D, Mcgee FA, Colenso CK, Zavala K, Granata D, Carnevale V, Opazo JC, Brauchi SE (2022) Sequence and structural conservation reveal fingerprint residues in TRP channels. Elife 11:e73645.
- Canciello A, Cerveró-Varona A, Peserico A, Mauro A, Russo V, Morrione A, Giordano A, Barboni B (2022) “In medio stat virtus”: Insights into hybrid E/M phenotype attitudes. Front Cell Dev Biol 10.
- Canuti, M., Bianchi, S., Kolbl, O., Pond, S. L. K., Kumar, S., Gori, M., et al. (2022). Waiting for the truth: is reluctance in accepting an early origin hypothesis for SARS-CoV-2 delaying our understanding of viral emergence? BMJ Glob. Heal. 7, e008386.
- Caraballo-Ortiz MA, Miura S, Sanderford M, Dolker T, Tao Q, Weaver S, Pond SLK, Kumar S (2022) TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Bioinformatics 38:2719–2726.
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